Survey of indigenous diazotrophic bacteria

associated to maize in Uruguay

Summary Diazotrophs have been cultured from both the plant interior and root environment of maize. Studies using stable isotope (15N) incorporation imply that bacteria in association with maize are actively fixing nitrogen.  This evidence suggests that diazotroph-maize associations have potential benefits to agriculture if the yields of maize can be sustained in the absence of high N fertilizer inputs.  As nitrogen fertilization is an important cost in maize production and environmental protection, the enhancement of maize-diazotroph association would be of great economic value to Uruguay.  Data in support of plant growth benefits to maize accrued via nitrogenase activity are lacking in this country.  Investigations on diazotroph-maize associations, such as plant genotype and cultivation conditions, and bacterial community structure and population dynamics of associating diazotrophs should illuminate those interactions that can be further explored and manipulated to enhance biological nitrogen fixation and sustainable production of maize plants.

This study aims to enhance biological nitrogen fixation in maize in Uruguay.  To this end, isolation, characterization and quantification of nitrogen fixed of the predominant endophytic diazotrophs associated to various maize varieties will be performed.

 

Proposed research project   

Scientific background

Breeding programs for crop plants are designed to improve agronomic characteristics such as yield, fertilizer use efficiency and disease resistance.  These programs do not typically consider interactions between plants and soil microbial communities like diazotrophic bacteria.  It is well known that maize plants can establish natural associations with various N2-fixing bacteria like Azospirillum[i], Klebsiella[ii] [iii], Pantoea, Herbaspirillum and Bacillus[iv][v].  All or some of these bacteria may be responsible for supplying the plants with fixed N2.

The potential of associative diazotrophic bacteria to promote the growth of many cereals and grasses has been demonstrated[vi] by several authors. In addition to N2 fixation, associative diazotrophs exert their positive effects on plant growth directly or indirectly through a combination of different mechanisms.  Diazotrophs can affect plant growth directly by the synthesis of phytohormones and vitamins, inhibition of plant ethylene synthesis, improved nutrient uptake, enhanced stress resistance, solubilization of inorganic phosphate and mineralization of organic phosphate.  Indirectly, diazotrophs are able to decrease or prevent the deleterious effects of pathogenic microorganisms, mostly through the synthesis of antibiotics and/or fungicidal compounds, through competition for nutrients or by the induction of systemic resistance to pathogens.  In addition, they can affect the plant indirectly by interacting with other beneficial microorganisms.  This suggests that there is potential for a plant growth benefit from diazotrophic bacteria if the appropriate bacteria and/or plant genotype and growth conditions are met.  In view of the above, this study aimed to identify indigenous diazotrophic bacteria associated to maize varieties in Uruguay with increased plant productivity and in particular, nitrogen fixation ability.

 

Scientific scope of the project

Nitrogen is an essential plant nutrient. It is the nutrient that is most commonly deficient in soils, contributing to reduced agricultural yields throughout the world.  Nitrogen can be supplied to crops by biological nitrogen fixation (BNF), a process which is becoming more important not only for reducing energy costs, but also in seeking more sustainable agricultural production.  Therefore, nitrogen-fixing microorganisms could be important components of sustainable agricultural systems.  Maize is an important food crop in Uruguay and Latin America.  The screening of plant genotype for higher contributions of BNF has been cited to be the key to the replacement of N fertilizers in several important crops like sugar cane, rice, wheat, maize and others.

This study aims to enhance biological nitrogen fixation in maize in Uruguay.  To this end, isolation, characterization and quantification of nitrogen fixed of the predominant endophytic diazotrophs associated to various maize varieties will be performed.

 

Detailed work plan for first year, including proposed methods and techniques

Most reported isolations of maize endophytes result from work done with plants cultivated in the field.  In many cases, the working hypothesis is that the inoculum source of endophytic diazotrophs is the soil from which the crop is frequently cultivated.  The Rhizobium-legume model follow this pattern but not is the case of sugar cane, where the endophyte A. diazotrophicus has been found in the tissue of sugar cane, but has not been recovered from soil between crop rows [vii] [viii].  Several studies have reported the isolation of diazotrophs from surface sterilized seeds of grasses, including turf grass, rice and maize7.  Maize surface sterilized seeds possessed 105-106 bacteria per gram fresh weight[ix]. Plants grown under sterile conditions from surface-sterilized seeds also contained stem bacteria but at levels 100-fold lower than plants cultured in non-sterile soil.  This suggests that the endophitic bacteria can be transmitted either through seed or through soil.  Inoculum seed trasmition is potentially important in annual specie like maize and suggest a simple method of inoculation of plant.

In this study indigenous diazotrophic bacteria able to colonize plant tissues, associated to maize in Uruguay will be investigated.

Step 1 : Isolation and identification of diazotrophic endophytes in maize

Uruguay has a collection of maize germplasm that we will use for this study[x][xi].. The most common varieties of maize used in Uruguay will be used to isolate diazotrophic endophytes from seed, stems tissue and roots previously surface sterilized.  Isolation of diazotrophic bacteria will be done using a modified semisolid N-free LG1 medium[xii],  The microorganisms of interest will be purified and characterized by morphologic and cultural methods.

 

Step 2 : Screening of diazotrophic endophytes and identification of strains with the best abilities to colonize, fix N, and promote plant growth.

Microbial isolates characterized previously will be screened for nitrogen fixation effectiveness by a single-inoculation trial in soil microcosms.  The parameters evaluated will be dry biomass accumulation (root and shoot), N and P uptake and N2-fixation (15N).  A further field test could be performed in the future.

 

Step 3: Screening of maize germplasm for low mineral N dependence and high nitrogen fixation.

An association that contributes to the nitrogen nutrition of maize might be most easily identified when plant are cultivated with little dependence on exogenously supplied nitrogen. The rate of N fertilizer application can affect not only the activity of the indigenous population of nitrogen fixers, but also the activity of inoculated strains. Therefore a greenhouse experiment will be conducted to study the combined effect of diazotrophic bacteria activity and mineral nitrogen fertilisation..

Surfaced sterilized seeds of previous selected varieties of maize will be planted in non sterile sand-soil and watered with 3 levels of N fertilizers (low, medium and high).

 

Expected outputs:

*   Contribute to enhance maize productivity and improve maize breeding programmes in Uruguay.

*   Enhance biological nitrogen fixation in maize in Uruguayan agricultural systems

*   Contribute with a collection of indigenous diazotrophic bacteria associated to maize

*   Disseminate results of work through national and international scientific journals

 

REFERENCES

1.       Christansen-Weniger C, Vanderleyden J (1994). Ammonium-excreting, Azospirillum sp. become intracellularly established in maize (Zea mays) para-nodules. Biol. Fertil. Soils 17: 1-8.

2.       Chelius, M.K. and E.W. Triplett. 2000. Immunolocalization of dinitrogenase reductase produced by Klebsiella pneumoniae in association with Zea mays L. Appl. Environ. Microbiol. 66:783-787

3.       Dong, Y., J.D. Glasner, F.R. Blattner, and E.W. Triplett. 2001. Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K12 open reading frames. Appl. Environ Microbiol. 67(4):1911-1921

4.       Chelius, M.K. and E.W. Triplett. 2000. Diazotrophic endophytes assoicated with maize. In: Prokaryotic Nitrogen Fixation: a Model System for the Analysis of a Biological Process, E.W. Triplett, ed., Horizon Scientific Press, Norfolk, UK, pp. 779-792

5.       Palus, J.A., J. Borneman, P.W. Ludden, and E.W. Triplett. 1996. Isolation and characterization of endophytic diazotrophs from Zea mays L. and Zea luxurians Iltis and Doebley. Plant and Soil. 186: 135-142

6.       Burkholderia, a Genus Rich in Plant-Associated Nitrogen Fixers. with Wide Environmental and Geographic Distribution, Paulina Estrada-De Los Santos, Rocio Bustillos-Cristales, And Jesus Caballero-Mellado*Applied And Environmental Microbiology 2001, P. 2790–2798 Vol. 67, No. 6.

7.       “Infection and colonization of sugar cane and other graminaceous plants by endophytic diazotrophs. Crit. Rev. PlantSci. 17:77-119.(1997). James, E.K., and Olivares, F.L.

8.       “Recent advances in BNF with non-legume plants. Soil Biol. Biochem. 29:911-922.(1997). Baldani,J.L., Caruso,L., Baldani, V.L.D., Goi, S.R., and Döbereiner,J.

9.       McInroy and Klopper (1995)

10.   “Breeding potential of Maize Accessions from Argentina, Chile, USA, and Uruguay” in Crop Science. 38:866-872 (1998). Salhuana, W.; Pollak, L.; Ferrer, M.; Paratori, O. y Vivo, G

11.   “Sampling strategy to develop a core collection of Uruguayan maize landraces” in Genetic Resources and Crop Evolution, 48: 381-390 (2001), also “Breeding potential of Maize Accessions from Argentina, Chile, USA, and Uruguay” in Crop Science. 38:866-872 (1998). Salhuana, W.; Pollak, L.; Ferrer, M.; Paratori, O. y Vivo, G

12.   Cavalcante and Döbereiner

 

 



[i] Christansen-Weniger C, Vanderleyden J (1994). Ammonium-excreting, Azospirillum sp. become intracellularly established in maize (Zea mays) para-nodules. Biol. Fertil. Soils 17: 1-8.

[ii] Chelius, M.K. and E.W. Triplett. 2000. Immunolocalization of dinitrogenase reductase produced by Klebsiella pneumoniae in association with Zea mays L. Appl. Environ. Microbiol. 66:783-787

[iii] Dong, Y., J.D. Glasner, F.R. Blattner, and E.W. Triplett. 2001. Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K12 open reading frames. Appl. Environ Microbiol. 67(4):1911-1921

[iv] Chelius, M.K. and E.W. Triplett. 2000. Diazotrophic endophytes assoicated with maize. In: Prokaryotic Nitrogen Fixation: a Model System for the Analysis of a Biological Process, E.W. Triplett, ed., Horizon Scientific Press, Norfolk, UK, pp. 779-792

[v] Palus, J.A., J. Borneman, P.W. Ludden, and E.W. Triplett. 1996. Isolation and characterization of endophytic diazotrophs from Zea mays L. and Zea luxurians Iltis and Doebley. Plant and Soil. 186: 135-142

[vi] Burkholderia, a Genus Rich in Plant-Associated Nitrogen Fixers. with Wide Environmental and Geographic Distribution, PAULINA ESTRADA-DE LOS SANTOS, ROCI ´ O BUSTILLOS-CRISTALES, AND JESU ´ S CABALLERO-MELLADO*APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 10.1128/AEM.67.6.2790–2798.2001. June 2001, p. 2790–2798 Vol. 67, No. 6. Copyright © 2001, American Society for Microbiology.

[vii]Infection and colonization of sugar cane and other graminaceous plants by endophytic diazotrophs. Crit. Rev. PlantSci. 17:77-119.(1997). James, E.K., and Olivares, F.L.

[viii] “Recent advances in BNF with non-legume plants. Soil Biol. Biochem. 29:911-922.(1997). Baldani,J.L., Caruso,L., Baldani, V.L.D., Goi, S.R., and Döbereiner,J.

[ix] McInroy and Klopper (1995)

[x] “Breeding potential of Maize Accessions from Argentina, Chile, USA, and Uruguay” in Crop Science. 38:866-872 (1998). Salhuana, W.; Pollak, L.; Ferrer, M.; Paratori, O. y Vivo, G

[xi] “Sampling strategy to develop a core collection of Uruguayan maize landraces” in Genetic Resources and Crop Evolution, 48: 381-390 (2001), also “Breeding potential of Maize Accessions from Argentina, Chile, USA, and Uruguay” in Crop Science. 38:866-872 (1998). Salhuana, W.; Pollak, L.; Ferrer, M.; Paratori, O. y Vivo, G

[xii] Cavalcante and Döbereiner

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